Publications
Work by our team and partners
Biotia team members have published over 40 peer-reviewed studies driven by expertise of sequencing technology spanning from clinical research on infectious diseases, to environmental metagenomics and microbial surveillance.
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Publications
Publications
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ASM 2023: Highly Accurate and Reliable Next-Generation Sequencing-Based Urine Assay Overperforms Conventional Diagnostics
ASM 2023: A Global Pandemic Early Warning System
Utilization of Clinical-Grade Metagenomics in Urinary Tract Infection Diagnostics: Improving High-Risk Patients’ Outcomes with a Genomic-Based Assay
Investigation into the Potential Role of Cryptic Viral Infection in Villitis of Unknown Etiology Using Pan-Viral Metagenomic Sequencing
The Challenges and Opportunities in Creating an Early Warning System for Global Pandemics (pre-print)
Ozone Disinfection for Elimination of Bacteria and Degradation of SARS-CoV2 RNA for Medical Environments
ID Week 2022: Clinical-Grade Metagenomics in Urinary Tract Infections: Improving Performance of Next-Generation Sequencing Assays Using Internal Controls and Machine Learning
Comparative Effectiveness of Single vs Repeated Rapid SARS-CoV-2 Antigen Testing Among Asymptomatic Individuals in a Workplace Setting
Fecal Microbiota Transplantation Commonly Failed in Children with Co-Morbidities
IDWeek 2021: Performance Characteristics of Sequencing Assays for Identification of the the SARS-CoV-2 Viral Genome
IDWeek 2021: Extraction-free RT-PCR for detection of SARS-CoV-2 variants of concerns
IDWeek 2021: A novel likelihood-based model to estimate SARS-CoV-2 viral titer from next-generation sequencing (NGS) data
Draft Genome Sequences of Fungi Isolated from the International Space Station during the Microbial Tracking-2 Experiment
Sequencing of Circulating Microbial Cell-Free DNA Can Identify Pathogens in Periprosthetic Joint Infections
Characterization of Spacesuit Associated Microbial Communities and Their Implications for NASA Missions
Monoclonal Antibody Therapy in a Vaccine Breakthrough SARS-CoV-2 Hospitalized Delta (B. 1.617. 2) Variant Case
Draft Genome Sequences of Various Bacterial Phyla Isolated from the International Space Station
Evolution of Pathogen Response Genes Associated with Increased Disease Susceptibility During Adaptation to an Extreme Drought in a Brassica rapa Plant Population
Draft Genome Sequences of Aspergillus and Penicillium Species Isolated from the International Space Station and Crew Resupply Vehicle Capsule
Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions
Targeted Hybridization Capture of SARS-CoV-2 and Metagenomics Enables Genetic Variant Discovery and Nasal Microbiome Insights
Draft Genome Sequences of Lactobacillales Isolated from the International Space Station
IDWeek 2020 Abstract: SARS-CoV-2 NGS Assay Powered by Biotia COVID-DX Software
Draft Genome Sequences of Klebsiella Species Isolated from the International Space Station
End-To-End Protocol for The Detection of SARS-CoV-2 from Built Environments
Paenibacillus Infection With Frequent Viral Coinfection Contributes To Postinfectious Hydrocephalus In Ugandan Infants
Draft Genome Sequences of Enterobacteriales Strains Isolated from the International Space Station
Next Generation Sequencing Reveals the Skin Microbiome
Draft Genome Sequences of Rhodotorula mucilaginosa Strains Isolated from the International Space Station
Ozone Treatment For Elimination Of Bacteria And SARS-CoV-2 For Medical Environments (Preprint)
Global Genetic Cartography of Urban Metagenomes and Anti-microbial Resistance
A Metagenomic Analysis of Environmental and Clinical Samples Using a Secure Hybrid Cloud Solution (Abstract)
Bacteroides ovatus ATCC 8483 Monotherapy is Superior to Traditional Fecal Transplant and Multi-strain Bacteriotherapy in a Murine Colitis Model
Comparison of Five Testing Modalities for the Assessment of Patient Environment Cleanliness
Insights Into Myalgic Encephalomyelitis/Chronic Fatigue Syndrome Phenotypes Through Comprehensive Metabolomics
Communicating the Promise, Risks, and Ethics of Large-scale, Open Space Microbiome and Metagenome Research (Preprint)
Metagenomic Characterization of Ambulances Across the USA
Comprehensive Benchmarking and Ensemble Approaches for Metagenomic Classifiers
Fecal Metagenomic Profiles in Subgroups of Patients with Myalgic Encephalomyelitis/Chronic Fatigue Syndrome
International Standards for Genomes, Transcriptomes, and Metagenomes
Serial Fecal Microbiota Transplantation Alters Mucosal Gene Expression in Pediatric Ulcerative Colitis
Composition and Function of the Pediatric Colonic Mucosal Microbiome in Untreated Patients with Ulcerative Colitis
The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium Inaugural Meeting Report
Transfer of Viral Communities Between Human Individuals During Fecal Microbiota Transplantation
Geospatial Resolution of Human and Bacterial Diversity with City-scale Metagenomics
